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* When PED file has genotypes saved, there is no need for a VCF file as input.
* When PED file has genotypes saved, there is no need for a VCF file as input.
* RMW takes PED/DAT file in Merlin format. Please refer to [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description] for details.
* RMW takes PED/DAT file in Merlin format. Please refer to [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description] for details.
* PED file requires "dummy" parents to be included in the pedigree file. To check the integrity of your PED/DAT file, please use [http://www.sph.umich.edu/csg/abecasis/PedStats '''pedstats''']. To add dummy parents into the pedigree, please use the [[Media:Script.tgz '''perl script''']].
* PED file requires "dummy" parents to be included in the pedigree file. To check the integrity of your PED/DAT file, please use [http://www.sph.umich.edu/csg/abecasis/PedStats '''pedstats''']. To add dummy parents into the pedigree, please use the [[Media:Script.tgz | '''perl script''']].
* An example PED file is in the following:
* An example PED file is in the following:
1 1 0 0 1 1.5 1 23 A A A A A A A A A A
1 1 0 0 1 1.5 1 23 A A A A A A A A A A
