2,004
edits
Changes
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4 4.1 0 0 2 23 0.008
4 4.1 0 0 2 23 0.008
5 5.1 0 0 2 34 2.35
5 5.1 0 0 2 34 2.35
== Output Formats ==
* There are two files generated automatically by default:
prefix.traitName.singlevar.score.txt
prefix.traitName.singlevar.cov.txt
* prefix.traitName.singlevar.score.txt contains summary level statistics that are needed by Rare-Metal. An example is shown in below:
LDL mean= -0.00, variance= 1.00, heritability= 34.30
===================================================================
CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC STAT ALT_ALLELE_EFFSIZE PVALUE
chr1 762320 G A 6103 0.0038225 0.0038225 45 4.73428 0.0949001 0.502675
chr1 865628 G A 6103 0.00556756 0.00556756 67 18.3894 0.249333 0.0322511
chr1 865665 G A 6103 8.30979e-05 8.30979e-05 1 -0.740215 -0.599493 0.505316
chr1 878744 C G 6103 0.00667334 0.00667334 80 -19.5138 -0.220432 0.0380796
chr1 879381 G A 6103 8.31117e-05 8.31117e-05 1 -0.831691 -0.61887 0.473108
== Examples ==
== Examples ==
