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2 bytes added ,  19:02, 16 November 2012
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==== Output Files ====
 
==== Output Files ====
--prefix is optional.  
+
* --prefix is optional.  
 
* If --prefix is not specified, the output file names will be:
 
* If --prefix is not specified, the output file names will be:
 
   traitname.singlevar.score.txt
 
   traitname.singlevar.score.txt
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