2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Chromosome X
==== Chromosome X ====
==== Chromosome X ====
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --fitX is used.
* --xLabel should have a value of a string which specifies how variants on chromosome X are coded. The default is "X".
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --fitX is used.
* The default for --xStart is 2699520 and default for --xEnd is 154931044, according to NCBI genome build 37.
=== Handling Unrelated Individuals ===
=== Handling Unrelated Individuals ===
* To let Rare-Metal-Worker handle unrelated individuals, we just have to code the individuals as unrelated in PED file, or each individual belongs to a unique family. Then Rare-Metal-Worker will take care of the rest.
* To let Rare-Metal-Worker handle unrelated individuals, we just have to code the individuals as unrelated in PED file, or each individual belongs to a unique family. Then Rare-Metal-Worker will take care of the rest.
