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85 bytes removed
, 19:29, 16 November 2012
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| * '''Markers in PED and DAT file must be sorted by chromosome and position.''' | | * '''Markers in PED and DAT file must be sorted by chromosome and position.''' |
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| + | * Covariate and trait values are saved in PED file. Covariate and trait descriptions are saved in DAT file. |
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| ==== VCF File ==== | | ==== VCF File ==== |
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| bgzip input.vcf ## this command will produce input.vcf.gz | | bgzip input.vcf ## this command will produce input.vcf.gz |
| tabix -pvcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi | | tabix -pvcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi |
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− | ==== Covariates & Traits ====
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− | * Covariate and trait values are saved in PED file. Covariate and trait descriptions are saved in DAT file.
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− | * It follows Merlin input format as in the above link.
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| === Software Options === | | === Software Options === |