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We use the following notations to describe our methods:
We use the following notations to describe our methods:
<math>\mathbf{y}</math> is the observed phenotype vector
<math>\mathbf{y}</math> is the vector of observed quantitative trait
<math> \hat{\boldsymbol{\Omega}} </math> is the estimated covariance matrix of <math>\mathbf{y}</math>
<math> \hat{\boldsymbol{\Omega}} </math> is the estimated covariance matrix of <math>\mathbf{y}</math>
<math>\boldsymbol{\varepsilon}</math> is the non-shared environmental effects
<math>\boldsymbol{\varepsilon}</math> is the non-shared environmental effects
<math> \sigma_g^2 </math> is the genetic component
<math> {{\sigma_g}_X}^2 </math> is the genetic component for markers on chromosome X
<math>\sigma_e^2 </math> is the non-shared environmental component.
===SINGLE VARIANT SCORE TEST===
===SINGLE VARIANT SCORE TEST===
