Difference between revisions of "RAREMETALWORKER SPECIAL TOPICS"
From Genome Analysis Wiki
Jump to navigationJump to searchShuang Feng (talk | contribs) (Undo revision 10107 by Shuang Feng (talk)) |
Shuang Feng (talk | contribs) |
||
Line 1: | Line 1: | ||
− | This page describes how RAREMETALWORKER handles some special cased during analyses. | + | This page describes how [[RAREMETALWORKER]] handles some special cased during analyses. |
== Unrelated Individuals == | == Unrelated Individuals == | ||
Line 14: | Line 14: | ||
== Analyzing Chromosome X== | == Analyzing Chromosome X== | ||
− | * | + | * Special cares only needs |
− | |||
− |
Revision as of 11:21, 14 April 2014
This page describes how RAREMETALWORKER handles some special cased during analyses.
RAREMETALWORKER generates single variant association test statistics for a single study prior to meta-analysis. This page provides a brief description of the statistics that RAREMETALWORKER calculates, together with key formulae.
Missing Data
- Individuals with missing phenotypes will be excluded from analysis.
- If --makeResiduals is used for adjusting covariates, then individuals with missing covariates will also be excluded.
- Individuals that are not genotyped will also be excluded from analyses.
Analyzing Chromosome X
- Special cares only needs