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Revision as of 02:14, 9 March 2015
, 02:14, 9 March 2015→--dosage
* --dosage must be used with --vcf option.
* --dosage must be used with --vcf option.
* Description of dosage format in a VCF file can be found in [[RAREMETALWORKER#DOSAGE | '''dosage''']].
* Description of dosage format in a VCF file can be found in [[RAREMETALWORKER#DOSAGE | '''dosage''']].
===--flagDosage===
* This option let user customize the name of field in VCF file that labels dosage data.
* The default is "DS".
===--noeof===
===--noeof===
* If you VCF file does not have the BGZF EOF markers, you should use --noeof option to let RAREMETALWORKER skip checking the BGZF EOF markers at the end of the file.
* If you VCF file does not have the BGZF EOF markers, you should use --noeof option to let RAREMETALWORKER skip checking the BGZF EOF markers at the end of the file.
