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Revision as of 02:17, 9 March 2015
, 02:17, 9 March 2015→--geneMap
* --geneMap takes a string describing the path to find mapping file for manhattan plot annotation.
* --geneMap takes a string describing the path to find mapping file for manhattan plot annotation.
* The default is human genome build 19, saved in raremetal/data/refFlat_hg19.txt.
* The default is human genome build 19, saved in raremetal/data/refFlat_hg19.txt.
===--mergedVCFID===
* This options allows RAREMETALWORKER to recognize VCF samples IDs in "FAMID_PID" format.
* The default value is OFF, which means VCF sample IDs are consistent with PID field in PED file.
==PhoneHome==
==PhoneHome==
