2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchRAREMETALWORKER command reference (view source)
Revision as of 12:27, 14 April 2014
, 12:27, 14 April 2014→Output Files
==Output Files==
==Output Files==
===--prefix===
* --prefix takes a value of a string as the prefix of your output files.
* For a full list of output files generated by RAREMETALWORKER, please refer to [[RAREMETALWORKER#OUTPUT_FILE_FORMATS | '''output''']].
===--LDwindow===
*--LDwindow takes a integer value as the size of the moving window.
* RAREMETALWORKER generates LD matrices between a current marker that it is working on and all markers within this window.
* The default size is 1 million bases.
* For more information about the LD matrix, please refer to [[RAREMETALWORKER#LD_Matrices | '''LD matrix''']].
===--zip===
* By issuing --zip, RAREMETALWORKER compress the [[ RAREMETALWORKER#Summary_Statistics| '''summary statistics''']] and [[RAREMETALWORKER#LD_Matrices | '''LD matrices''']] generated automatically, using gzip.
=== --thin ===
===--labelHits===
==VC Options==
==VC Options==
