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, 12:47, 14 April 2014
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| ==VC Options== | | ==VC Options== |
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| + | ===--vcX=== |
| + | * --vcX option has to be used with --kinPedigree (when pedigree kinship is used), or --kinGeno (when genomic relationship matrix is estimated), or --kinFile ( when GRM is read from a file). |
| + | * Using --vcX option let RAREMETALWORKER fit a linear mixed model to analyze chromosome X, using both autosomal kinship and chromosome X kinship. |
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| + | ===--separateX=== |
| + | * --separateX option must be used with --vcX option. |
| + | * Using --separateX option requests RAREMETALWORKER to fit a linear mixed model using only chromosome X kinship for analyses of chromosome X markers. |
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| + | Please refer to [[RAREMETALWORKER_method#ANALYZING_MARKERS_ON_CHROMOSOME_X| '''method''']] and [[RAREMETALWORKER_SPECIAL_TOPICS#Analyzing_Chromosome_X | '''technical details''']] for more explanation. |
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| ==Trait Options== | | ==Trait Options== |