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Revision as of 12:08, 19 June 2014
, 12:08, 19 June 2014→List of Options
* The [[RAREMETAL_FAQ | '''FAQ''']]
* The [[RAREMETAL_FAQ | '''FAQ''']]
Options:
Input Files : --ped [], --dat [], --vcf [], --dosage, --noeof
Output Files : --prefix [], --LDwindow [1000000], --zip, --thin,
--labelHits
VC Options : --vcX, --separateX
Trait Options : --makeResiduals, --inverseNormal, --traitName []
Model Options : --recessive, --dominant
Kinship Source : --kinPedigree, --kinGeno, --kinFile [], --kinxFile [],
--kinSave
Kinship Options : --kinMaf [0.05], --kinMiss [0.05]
Chromosome X : --xLabel [X], --xStart [2699520], --xEnd [154931044],
--maleLabel [1], --femaleLabel [2]
others : --cpu [1], --kinOnly,
--geneMap [../data/refFlat_hg19.txt]
PhoneHome : --noPhoneHome, --phoneHomeThinning [100]
==Input Files==
==Input Files==
