271
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchRAREMETAL Command Reference (view source)
Revision as of 16:08, 27 November 2016
, 16:08, 27 November 2016→Association Methods for Meta-analysis
=== Association Methods for Meta-analysis ===
=== Association Methods for Meta-analysis ===
--useExact [ON|OFF]
--useExact optimized method for unbalanced studies with unrelated samples, described [[RAREMETAL METHOD#SINGLE_VARIANT_SCORE_TEST]].
--burden [ON|OFF]
--burden burden test with equal weight
--MB [ON|OFF]
--MAB burden test with MAF as weight
--VT [ON|OFF]
--MB burden test with sqrt(maf(1-maf)) as weight
--SKAT [ON|OFF]
--VT variant threshold test
--SKAT standard SKAT test
--condition [your.list.of variants.to.be.conditioned.upon]
--condition [your.list.of variants.to.be.conditioned.upon]
Additional details for these options are [[Rare-Metal#Association_Methods|available]].
Additional details for these options are [[Rare-Metal#Association_Methods|available]].
