From Genome Analysis Wiki
Jump to navigationJump to search
86 bytes added
, 17:53, 16 March 2018
Line 1: |
Line 1: |
| + | [[Category:RAREMETAL]] |
| ==Useful Pages== | | ==Useful Pages== |
| * The [[RAREMETAL| Home Page]] | | * The [[RAREMETAL| Home Page]] |
Line 44: |
Line 45: |
| | | |
| === Association Methods for Meta-analysis === | | === Association Methods for Meta-analysis === |
− | --useExact optimized method for unbalanced studies with unrelated samples, described [[RAREMETAL METHOD#SINGLE_VARIANT_SCORE_TEST]]. | + | --useExact optimized method for unbalanced studies with unrelated samples, |
| + | described [[RAREMETAL METHOD#SINGLE_VARIANT_SCORE_TEST]]. |
| --burden burden test with equal weight | | --burden burden test with equal weight |
− | --MAB burden test with MAF as weight | + | --MAB burden test with MAF as weight |
− | --MB burden test with sqrt(maf(1-maf)) as weight | + | --MB burden test with sqrt(maf(1-maf)) as weight |
− | --VT variant threshold test | + | --BBeta beta distribution as weight |
| + | --VT variant threshold test |
| --SKAT standard SKAT test | | --SKAT standard SKAT test |
| --condition [your.list.of variants.to.be.conditioned.upon] | | --condition [your.list.of variants.to.be.conditioned.upon] |