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, 14:12, 7 August 2013
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| --longOutput, --tabulateHits, --hitsCutoff [1.0e-06] | | --longOutput, --tabulateHits, --hitsCutoff [1.0e-06] |
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− | === Describing Input Files === | + | === Describing Studies === |
− | SEPARATOR [WHITESPACE|COMMA|BOTH|TAB] (default = WHITESPACE) | + | --studyName [your.list.of.studies] |
− | COLUMNCOUNTING [STRICT|LENIENT] (default = 'STRICT')
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− | MARKERLABEL [LABEL] (default = 'MARKER')
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− | ALLELELABELS [LABEL1 LABEL2] (default = 'ALLELE1','ALLELE2')
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− | EFFECTLABEL [LABEL|log(LABEL)] (default = 'EFFECT')
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− | FLIP
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− | Additional details on the [[rareMETAL COLUMNCOUNTING|COLUMNCOUNTING]] and [[rareMETAL EFFECTLABEL|EFFECTLABEL]] options are available. | + | Additional details on the [[http://genome.sph.umich.edu/wiki/Rare-Metal#List_of_Studies_2|--studyName]] option is available. |
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| === Filtering Input Files === | | === Filtering Input Files === |