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RAREMETAL Command Reference (view source)

Revision as of 14:27, 7 August 2013

150 bytes added ,  14:27, 7 August 2013
→‎Methods to Group Rare Variants
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=== Methods to Group Rare Variants ===
 
=== Methods to Group Rare Variants ===
   −
  ADDFILTER        [LABEL CONDITION VALUE]    (example = ADDFILTER N > 10)
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--groupFile      [your.groups.file]
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                    (available conditions are <, >, <=, >=, =, !=, IN)
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--annotatedVcf  [your.annotated.vcf]
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  REMOVEFILTERS
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--annotation     [nonsyn/stop/splice]
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--writeVcf      [ON|OFF]
   −
Additional details on these options are [[METAL ADDFILTER|available]].
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Additional details on [[Rare-Metal#Grouping_from_a_Group_File|groupFile]], [[Rare-Metal#Grouping_from_an_Annotated_VCF_File|annotatedVcf]] and [[Rare-Metal#Generate_a_VCF_File_to_Annotate_Outside_of_Rare_Metal|writeVcf]] options are available.
    
=== Sample Size Weighted Meta-analysis ===
 
=== Sample Size Weighted Meta-analysis ===
Shuang Feng
2,004

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