Difference between revisions of "RAREMETAL DOWNLOAD & BUILD"
From Genome Analysis Wiki
Jump to navigationJump to searchShuang Feng (talk | contribs) |
(Release 4.15.0; simplify release notes to point to self-contained repository.) |
||
| (148 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
| + | [[Category:RAREMETAL]] | ||
| + | [[Category:RAREMETALWORKER]] | ||
== Useful Wiki Pages == | == Useful Wiki Pages == | ||
| − | |||
* The [[RAREMETALWORKER | '''RAREMETALWORKER documentation''']] | * The [[RAREMETALWORKER | '''RAREMETALWORKER documentation''']] | ||
* The [[RAREMETAL_Documentation | '''RAREMETAL documentation''']] | * The [[RAREMETAL_Documentation | '''RAREMETAL documentation''']] | ||
* The [[RAREMETAL FAQ | '''FAQ''']] | * The [[RAREMETAL FAQ | '''FAQ''']] | ||
| + | * The [[RAREMETAL_Change_Log | '''Change Log''']] | ||
| − | == | + | ===GitHub=== |
| − | + | All source code is available on GitHub: | |
| − | + | https://github.com/statgen/Raremetal | |
| − | + | See README.md for instructions on how to compile RAREMETAL for your environment. It should be possible to compile in Mac OS and Linux environments. You will need '''Cmake''' and '''Cget''' available. | |
| − | + | Since version 4.13.6, RAREMETALWORKER and RAREMETAL are distributed within the same package in this repository. More information on changes may be found at our [https://github.com/statgen/raremetal/releases releases page]. | |
| − | + | ===SCRIPTS=== | |
| − | + | ====Calculating Odds Ratio from RAREMETALWORKER output==== | |
| − | * | + | *If you want to estimate '''Odds Ratios''' of variants analyzed by RAREMETALWORKER, the script [[Media:CalculateOddsRatio.tgz|'''calculateOddsRatio.pl''']] can help you augment RAREMETALWORKER output with estimated odds ratio to the last column. |
| − | + | *The script can also be found in the RAREMETAL package 4.13.6 and later, under directory '''raremetal/script/calculateOddsRatio.pl'''. | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
Latest revision as of 12:44, 14 March 2019
Useful Wiki Pages
- The RAREMETALWORKER documentation
- The RAREMETAL documentation
- The FAQ
- The Change Log
GitHub
All source code is available on GitHub:
https://github.com/statgen/Raremetal
See README.md for instructions on how to compile RAREMETAL for your environment. It should be possible to compile in Mac OS and Linux environments. You will need Cmake and Cget available.
Since version 4.13.6, RAREMETALWORKER and RAREMETAL are distributed within the same package in this repository. More information on changes may be found at our releases page.
SCRIPTS
Calculating Odds Ratio from RAREMETALWORKER output
- If you want to estimate Odds Ratios of variants analyzed by RAREMETALWORKER, the script calculateOddsRatio.pl can help you augment RAREMETALWORKER output with estimated odds ratio to the last column.
- The script can also be found in the RAREMETAL package 4.13.6 and later, under directory raremetal/script/calculateOddsRatio.pl.
