Difference between revisions of "RAREMETAL DOWNLOAD & BUILD"

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(How to Compile)
(How to Compile)
Line 32: Line 32:
 
   prompt> cd raremetal
 
   prompt> cd raremetal
 
   prompt> make
 
   prompt> make
   This builds RAREMETAL and RAREMETALWORKER under bin/ directory.  
+
   #This builds RAREMETAL and RAREMETALWORKER under bin/ directory.  
  
 
* If you prefer to build individual tool:
 
* If you prefer to build individual tool:
 
   prompt> cd raremetal/raremetalworker/src
 
   prompt> cd raremetal/raremetalworker/src
 
   prompt> make
 
   prompt> make
   This will build RAREMETALWORKER under raremetal/bin/ directory.
+
   #This will build RAREMETALWORKER under raremetal/bin/ directory.
  
 
   prompt> cd raremetal/raremetal/src
 
   prompt> cd raremetal/raremetal/src
 
   prompt> make
 
   prompt> make
   This will build RAREMETAL under raremetal/bin/ directory.
+
   #This will build RAREMETAL under raremetal/bin/ directory.
  
 
* If your compiler allows openmp (parallel computing), then use the following to build RAREMETALWORKER that allows parallel computing:
 
* If your compiler allows openmp (parallel computing), then use the following to build RAREMETALWORKER that allows parallel computing:
 
   prompt> cd raremetal/raremetalworker/src
 
   prompt> cd raremetal/raremetalworker/src
 
   prompt> make openmp
 
   prompt> make openmp
   This will build RAREMETALWORKER under raremetal/bin/ directory.
+
   #This will build RAREMETALWORKER under raremetal/bin/ directory.
  
 
* If you prefer to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirements.
 
* If you prefer to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirements.
  
 
For compiling questions, please go to [http://genome.sph.umich.edu/wiki/RAREMETAL_FAQ ''' FAQ'''] for more information.
 
For compiling questions, please go to [http://genome.sph.umich.edu/wiki/RAREMETAL_FAQ ''' FAQ'''] for more information.

Revision as of 01:51, 24 April 2014

Useful Wiki Pages

There are several pages in this Wiki that may be useful to RAREMETALWORKER users. Here are links to key pages:

Where to Download

We have tested our source code package on several platforms, including Linux/Ubuntu, Linux/Debian, Linux/RedHat, Linux/CentOS, Mac OS X 10.8, CygWIN64 and MinGW for Windows.

From version 4.9, RAREMETALWORKER and RAREMETAL source code are distributed within the same package, which can be downloaded in the following:

  • The source package for Linux can be downloaded here: for Linux
  • The source package for Linux can be downloaded here: for MAC OS X

For binary executables, we only distribute the one for Linux. For the other platforms, we recommend you build from source code that can be downloaded from above.

How to Compile

  • If you choose to build from the source files, you could start from decompress the package using the following command:
 prompt> tar xvf LINUX_raremetal.0.4.9.tgz
 prompt> cd raremetal_0.4.9
  • If you prefer to build two tools all at once, then do the following:
 prompt> cd raremetal
 prompt> make
 #This builds RAREMETAL and RAREMETALWORKER under bin/ directory. 
  • If you prefer to build individual tool:
 prompt> cd raremetal/raremetalworker/src
 prompt> make
 #This will build RAREMETALWORKER under raremetal/bin/ directory.
 prompt> cd raremetal/raremetal/src
 prompt> make
 #This will build RAREMETAL under raremetal/bin/ directory.
  • If your compiler allows openmp (parallel computing), then use the following to build RAREMETALWORKER that allows parallel computing:
 prompt> cd raremetal/raremetalworker/src
 prompt> make openmp
 #This will build RAREMETALWORKER under raremetal/bin/ directory.
  • If you prefer to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirements.

For compiling questions, please go to FAQ for more information.