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Third, use the following command to do meta analysis:
Third, use the following command to do meta analysis:
./raremetal --studyName your.studyName.file --annotatedVcf your.annotated.vcf --annotation nonsyn/splicing/stop --burden --MB --SKAT --VT --maf 0.01 --prefix yourPrefix
./raremetal --studyName your.studyName.file --annotatedVcf your.annotated.vcf --annotation nonsyn/splicing/stop --burden --MB --SKAT --VT --maf 0.01 --prefix yourPrefix
==TUTORIAL==
* For a comprehensive tutorial of RareMetalWorker and RareMETAL using example data sets, please go to the following:
[http://genome.sph.umich.edu/wiki/Tutorial:_RareMETAL '''RareMETAL Tutorial''']
== Q & A ==
== Q & A ==
