From Genome Analysis Wiki
Jump to navigationJump to search
11 bytes added
, 20:31, 7 August 2013
Line 176: |
Line 176: |
| * Currently, four methods are provided in '''Rare Metal''', CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test, and SKAT. | | * Currently, four methods are provided in '''Rare Metal''', CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test, and SKAT. |
| | | |
− | ==== Other Options==== | + | == Additional Analysis Options == |
| * --prefix allows customized prefix for output files. | | * --prefix allows customized prefix for output files. |
| * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05. | | * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05. |