2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Other Options
* Currently, four methods are provided in '''Rare Metal''', CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test, and SKAT.
* Currently, four methods are provided in '''Rare Metal''', CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test, and SKAT.
==== Other Options====
== Additional Analysis Options ==
* --prefix allows customized prefix for output files.
* --prefix allows customized prefix for output files.
* --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05.
* --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05.
