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* --tabulateHits works with --hitsCutoff together to generate reports for genes that have p-value less than specified cutoff from burden tests or SKAT. The default cutoff of p-value for genes to be reported is 1.0e-06, which can be specified by --hitsCutoff option. For more explanations and examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal#Tabulated_Top_Hits Tabulated Top Hits]].
* --tabulateHits works with --hitsCutoff together to generate reports for genes that have p-value less than specified cutoff from burden tests or SKAT. The default cutoff of p-value for genes to be reported is 1.0e-06, which can be specified by --hitsCutoff option. For more explanations and examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal#Tabulated_Top_Hits Tabulated Top Hits]].
== Input Files ==
Rare Metal needs the following as input:
Rare Metal needs the following as input:
'''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed.
'''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed.
=== Results Reported by rareMETAL ===
=== Results Reported by rareMETAL ===
