From Genome Analysis Wiki
Jump to navigationJump to search
No change in size
, 15:09, 4 November 2013
Line 134: |
Line 134: |
| | | |
| ==== Association Options==== | | ==== Association Options==== |
− | * Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''rareMETAL''', by specifying --burden, --MB, --VT and --SKAT. | + | * Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''RAREMETAL''', by specifying --burden, --MB, --VT and --SKAT. |
| * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05. | | * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05. |
| | | |