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Revision as of 15:27, 11 September 2015
, 15:27, 11 September 2015→Association Options
==== Association Options====
==== Association Options====
* Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''RAREMETAL''', by specifying --burden, --MB, --VT and --SKAT.
* Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''RAREMETAL''', by specifying --burden, --MB, --VT and --SKAT.
* --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. The default is maf<0.05.
* --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. Variants with maf below this threshold will be ignored. The default is maf<0.05.
==== Conditional Analysis====
==== Conditional Analysis====
