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From Genome Analysis Wiki
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C1orf159 1:1021285:G:T 1:1021302:T:C 1:1021315:A:C 1:1021386:G:A 1:1022534:C:T 1:1025751:C:T 1:1026913:C:T
C1orf159 1:1021285:G:T 1:1021302:T:C 1:1021315:A:C 1:1021386:G:A 1:1022534:C:T 1:1025751:C:T 1:1026913:C:T
===== From an Annotated VCF File =====
===== From an Annotated VCF File or Output a VCF File to Annotate =====
* If --groupFile option is '''NOT''' specified, '''rareMETAL''' will look for an annotated vcf file as blue print for variants to group.
* If --groupFile option is '''NOT''' specified, '''rareMETAL''' will look for an annotated vcf file as blue print for variants to group.
* The annotated VCF file should be specified using --annotatedVcf option.
* The annotated VCF file should be specified using --annotatedVcf option.
