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| SKAT || <math>\mathbf{Q}=\left(\sum_{i=1}^n{\mathbf{U_i^T}}\right) \mathbf{W}\left(\sum_{i=1}^n{\mathbf{U_i}}\right)</math> ||<math>\mathbf{Q}\sim\sum_{i=1}^m{\lambda_i\chi_{1,i}^2},\text{ where}</math> <math>\left(\lambda_1,\lambda_2,\dots,\lambda_m\right)\text{ are eigen values of}</math><math>\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}\mathbf{W}\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}</math>
| SKAT || <math>\mathbf{Q}=\left(\sum_{i=1}^n{\mathbf{U_i^T}}\right) \mathbf{W}\left(\sum_{i=1}^n{\mathbf{U_i}}\right)</math> ||<math>\mathbf{Q}\sim\sum_{i=1}^m{\lambda_i\chi_{1,i}^2},\text{ where}</math> <math>\left(\lambda_1,\lambda_2,\dots,\lambda_m\right)\text{ are eigen values of}</math><math>\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}\mathbf{W}\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}</math>
|}
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== Software Download and Installation ==
* University of Michigan CSG users can go to the following:
/net/fantasia/home/sfengsph/code/Rare-Metal/raremetal/bin/raremetal
=== Where to Download ===
* The software package for Linux and Mac (source code included) can be downloaded here: [[Media:raremetal.0.0.2.tgz|software package download]]
=== How to Compile ===
* Save it to your local path and decompress using the following command:
tar xvzf raremetal.0.0.1.tgz
* Go to raremetal_0.0.1/raremetal/src and type the following command to compile:
make
=== How to Execute ===
* Go to raremetal_0.0.1/raremetal/bin and use the following:
./raremetal
* For example usage, please refer to [[http://genome.sph.umich.edu/wiki/Rare-Metal#Example_Usage example command lines]]
== Basic Usage Instructions ==
== Basic Usage Instructions ==
