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'''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed.
'''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed.
== Results Reported by rareMETAL ==
=== Single Variant Meta Analysis Output ===
* Single variant meta analysis output has the following components: header and results.
* Single variant meta analysis output has the following components: header and results.
"!" means the variant observed from this study has different alleles from those in the first study.
"!" means the variant observed from this study has different alleles from those in the first study.
=== Burden Tests Meta Analysis Output ===
When --longOutput is specified, output includes both burden test results of genes and single variant results of the variants included in burden tests. Otherwise, single variant results of variants included in burden tests will not be included in the output.
When --longOutput is specified, output includes both burden test results of genes and single variant results of the variants included in burden tests. Otherwise, single variant results of variants included in burden tests will not be included in the output.
==== Long Output Format ====
* Here is an example of output file from SKAT when --longOutput is specified.
* Here is an example of output file from SKAT when --longOutput is specified.
##Method=Burden
##Method=Burden
KLHL17 2 1:897285:A:G;1:898869:C:T 0.0148408,0.00108369 -0.0502034,-0.0256403 0.528269,0.934606 0.00796222 0.00108369 0.0148408 -0.0484494 0.528878
KLHL17 2 1:897285:A:G;1:898869:C:T 0.0148408,0.00108369 -0.0502034,-0.0256403 0.528269,0.934606 0.00796222 0.00108369 0.0148408 -0.0484494 0.528878
====Short Output Format ====
* Here is an example of output file from SKAT when --longOutput is not specified.
* Here is an example of output file from SKAT when --longOutput is not specified.
