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RAREMETAL Documentation (view source)

Revision as of 21:25, 7 August 2013

3 bytes removed ,  21:25, 7 August 2013
→‎Burden Tests Meta Analysis Output
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=== Burden Tests Meta Analysis Output ===
 
=== Burden Tests Meta Analysis Output ===
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When --longOutput is specified, output includes both burden test results of genes and single variant results of the variants included in burden tests. Otherwise, single variant results of variants included in burden tests will not be included in the output.
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==== LONG TABLES ====
 
==== LONG TABLES ====
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* Here is an example of output file from SKAT when --longOutput is specified.  
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When --longOutput is specified, output includes both burden test results of genes and single variant results of the variants included in burden tests. Here is an example of output file from SKAT when --longOutput is specified.  
 
   ##Method=Burden
 
   ##Method=Burden
 
   ##STUDY_NUM=2
 
   ##STUDY_NUM=2
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==== SHORT TABLES ====
 
==== SHORT TABLES ====
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* Here is an example of output file from SKAT when --longOutput is not specified.
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Otherwise, single variant results of variants included in burden tests will not be included in the output. Here is an example of output file from SKAT when --longOutput is not specified.
    
   ##Method=Burden
 
   ##Method=Burden
Shuang Feng
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