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19 bytes removed
, 14:44, 13 April 2015
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| res<-conditional.rareMETALS.single(candidate.variant.vec=c("19:11200282","19:11200309"), score.stat.file, cov.file, | | res<-conditional.rareMETALS.single(candidate.variant.vec=c("19:11200282","19:11200309"), score.stat.file, cov.file, |
| known.variant.vec=c("19:11200754","19:11200806","19:11200839"), maf.cutoff=0.05, no.boot =1000, | | known.variant.vec=c("19:11200754","19:11200806","19:11200839"), maf.cutoff=0.05, no.boot =1000, |
− | alternative = c("two.sided", "greater", "less"), ix.gold = 1, | + | alternative = c("two.sided"), ix.gold = 1, |
| out.digits = 4, callrate.cutoff = 0, hwe.cutoff = 0, | | out.digits = 4, callrate.cutoff = 0, hwe.cutoff = 0, |
| p.value.known.variant.vec = NA, anno.known.variant.vec = NA, | | p.value.known.variant.vec = NA, anno.known.variant.vec = NA, |