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From Genome Analysis Wiki
Jump to navigationJump to search→A Simple Tutorial for Using the rareMETALS.single function
Example:
Example:
cov.file <- c("study1.MetaCov.assoc.gz","study2.MetaCov.assoc.gz")
cov.file <- c("study1.MetaCov.assoc.gz","study2.MetaCov.assoc.gz")
score.stat.file <- c("study1.MetaScore.assoc.gz","study2.MetaScore.assoc.gz")
score.stat.file <- c("study1.MetaScore.assoc.gz","study2.MetaScore.assoc.gz")
library(rareMETALS)
res <- rareMETALS.single(score.stat.file,cov.file=NULL,range="19:11200093-11201275",alternative="two.sided",ix.gold=1,callrate.cutoff=0,hwe.cutoff=0)
res <- rareMETALS.single(score.stat.file,cov.file=NULL,range="19:11200093-11201275",alternative="two.sided",ix.gold=1,callrate.cutoff=0,hwe.cutoff=0)
