Difference between revisions of "Raremetal Incoming updates"
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* When no conditional variant is available, warning is generated but not written to log file. | * When no conditional variant is available, warning is generated but not written to log file. | ||
* SKAT conditional analysis misses the last 3 column names. They should be cond_statistics, cond_pvalue_davis, cond_p_value_liu. | * SKAT conditional analysis misses the last 3 column names. They should be cond_statistics, cond_pvalue_davis, cond_p_value_liu. | ||
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* enable reading from .gz annotated vcf | * enable reading from .gz annotated vcf | ||
* add SKAT-O | * add SKAT-O | ||
* solve the numeric issue of lambda = 0 in SKAT | * solve the numeric issue of lambda = 0 in SKAT | ||
Revision as of 12:56, 8 July 2016
Main Wiki Page
Finished in test version
- Optimization for unbalanced studies (Jingjing Yang)
- Reduce running time when reading over 10,000s individual genotype from vcf
Incoming update
- Take snpeff as annotation input
- When no conditional variant is available, warning is generated but not written to log file.
- SKAT conditional analysis misses the last 3 column names. They should be cond_statistics, cond_pvalue_davis, cond_p_value_liu.
- enable reading from .gz annotated vcf
- add SKAT-O
- solve the numeric issue of lambda = 0 in SKAT
