Difference between revisions of "Read Mapping"

From Genome Analysis Wiki
Jump to: navigation, search
(Created page with '== Read mappers that we like are == [http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li. Karma - Currently under development…')
 
Line 2: Line 2:
  
 
[http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li.
 
[http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li.
 +
 
[[Karma]] - Currently under development here in Michigan; a memory hog, but fast and sensitive.
 
[[Karma]] - Currently under development here in Michigan; a memory hog, but fast and sensitive.
 +
 
[http://www.novocraft.com NovoAlign] - Potentially, a much more sensitive, but slow, aligner.
 
[http://www.novocraft.com NovoAlign] - Potentially, a much more sensitive, but slow, aligner.
  

Revision as of 11:29, 21 January 2010

Read mappers that we like are

BWA - A much faster aligner developed by Richard Durbin and Heng Li.

Karma - Currently under development here in Michigan; a memory hog, but fast and sensitive.

NovoAlign - Potentially, a much more sensitive, but slow, aligner.

All of these should output SAM format.

Other Aligners

MAQ - The venerable short read aligner developed by Richard Durbin and Heng Li.