Difference between revisions of "Read Mapping"
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[http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li. | [http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li. | ||
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[[Karma]] - Currently under development here in Michigan; a memory hog, but fast and sensitive. | [[Karma]] - Currently under development here in Michigan; a memory hog, but fast and sensitive. | ||
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[http://www.novocraft.com NovoAlign] - Potentially, a much more sensitive, but slow, aligner. | [http://www.novocraft.com NovoAlign] - Potentially, a much more sensitive, but slow, aligner. | ||
Revision as of 11:29, 21 January 2010
Read mappers that we like are
BWA - A much faster aligner developed by Richard Durbin and Heng Li.
Karma - Currently under development here in Michigan; a memory hog, but fast and sensitive.
NovoAlign - Potentially, a much more sensitive, but slow, aligner.
All of these should output SAM format.
Other Aligners
MAQ - The venerable short read aligner developed by Richard Durbin and Heng Li.
