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, 16:02, 30 January 2011
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| ;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s | | ;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s |
| source code [[File:vcfReader.v1.tar]] | | source code [[File:vcfReader.v1.tar]] |
− | Again, extract the tar file and then go into the directory to type make all to compile the code, you then will find binary file in the executables folder. | + | Again, extract the tar file and then go into the directory to type make all to compile the code, |
| + | you then will find binary file in the executables folder. |
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− | Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list. | + | Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first |
| + | to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list. |
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| Data File PREPARATION | | Data File PREPARATION |