Changes

   Again, extract the tar file and then go into the directory to type make all to compile the code, you then will find binary file in the executables folder.  

   Again, extract the tar file and then go into the directory to type make all to compile the code, you then will find binary file in the executables folder.  

  Note: If you going to analyze nonsynonymous and stop annotated variants,

  Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list.

  you should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on the vcf file.

Data File PREPARATION

Data File PREPARATION