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, 11:05, 30 July 2010
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| * length of this group from the leftmost position to the rightmost position, ISIZE or TLEN | | * length of this group from the leftmost position to the rightmost position, ISIZE or TLEN |
| * the query sequence for this alignment, SEQ | | * the query sequence for this alignment, SEQ |
− | * the query quality for this alignment, [[SAM# What is QUAL?|QUAL]], one for each base in the query sequence. | + | * the query quality for this alignment, [[SAM#What is QUAL?|QUAL]], one for each base in the query sequence. |
− | * Additional optional information is also contained within the alignment, [[SAM#What are TAGs|TAGs]]. A bunch of different information can be stored here and they appear as key/value pairs. See the spec for a detailed list of commonly used tags and what they mean. | + | * Additional optional information is also contained within the alignment, [[SAM#What are TAGs?|TAGs]]. A bunch of different information can be stored here and they appear as key/value pairs. See the spec for a detailed list of commonly used tags and what they mean. |
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| ==== What is a CIGAR? ==== | | ==== What is a CIGAR? ==== |