SAM/BAM Convert Sequence

From Genome Analysis Wiki
Revision as of 15:39, 7 December 2010 by Mktrost (talk | contribs) (Created page with '== SAM/BAM support conversion between '=' and the base in a sequence == '''Request:''' To be able to call SamRecord::getSequence and have it return the sequence with '=' or with…')
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

SAM/BAM support conversion between '=' and the base in a sequence

Request: To be able to call SamRecord::getSequence and have it return the sequence with '=' or with the correct bases.

Requester: Goncalo Abecasis & Hyun Min Kang

Date Requested: Nov 23, 2010?

Notes

It was requested to have this handled within the getSequence call so the user doesn't have to convert the sequence after calling getSequence.

Proposed Solution

....More details coming soon!

Added a class, SamQuerySeqWithRef, with methods seqWithEquals and seqWithoutEquals

Retrieved from "http://genome.sph.umich.edu/w/index.php?title=SAM/BAM_Convert_Sequence&oldid=2669"