3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
=== SAM Header Validation Rules ===
=== SAM Header Validation Rules ===
TODO
TODO
=== SAM Alignment Validation ===
=== SAM Alignment Validation ===
Consider may want to validate the cigar string against the read length...
Consider may want to validate the cigar string against the read length...
== Other Read Validation ==
{| class="wikitable" style="width:100%" border="1"
|+ style="font-size:150%"|'''SAM Alignment Record'''
! rowspan='2' width="60%"|Validation Criteria
! colspan="2" width="20%"|Implemented
! colspan="2" width="20%"|Tested
|-
! width="10%"|SAM
! width="10%"|BAM
! width="10%"|SAM
! width="10%"|BAM
|-
| If SO flag is set in the header, fail if the file is not sorted.
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|}
===SAM Questions===
===SAM Questions===
