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* src: source code for SEQMIX
* src: source code for SEQMIX
* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX
* Release: example files and command as well as the Readme.txt file that explains how to run SEQMIX
Before you run SEQMIX, or even while you are running SEQMIX examples (summarized by the example.sh file), please refer to the Readme.txt file for detailed explanation of the two steps for running SEQMIX.
Note that SEQMIX requires these specified files
* allele frequency for Africans
* allele frequency for European
* genetic distance file
* input vcf
The input vcf file is generated from sequencing experiment and the downstream data processing steps. The allele frequency and genetic distance files should be prepared by users and sometimes are tedious to do. The good news is that I have used these files for the whole genome level. Please contact me (youna@umich.edu) if you would like to use it. I will point you to the path if you are internal user and will figure out a way to share them (These files are fairly big) if you are a external users.
== Related Programs ==
== Related Programs ==
