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SeqShop: Analysis of Structural Variation Practical, December 2014 (view source)

Revision as of 16:42, 9 December 2014

524 bytes removed ,  16:42, 9 December 2014
→‎Reference Files
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<li>View Results</li>
 
<li>View Results</li>
 
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[[File:RefDir.png|500px]]
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  1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz
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1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz.tbi
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  1000G.snps_indels.22.sites.bcf
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</ul>
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1000G.snps_indels.22.sites.bcf.csi
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1kg.omni.chr22.36Mb.vcf.gz
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  1kg.pilot_release.merged.indels.sites.hg19.chr22.vcf
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Additional Reference files required just for Structural Variation:
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dbsnp.13147541variants.22.sites.bcf
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ls ${SS}/svtoolkit/ref
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dbsnp.13147541variants.22.sites.bcf.csi
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  dbsnp_135.b37.chr22.vcf.gz
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  dbsnp_135.b37.chr22.vcf.gz.tbi
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<li>View Results</li>
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  dbsnp.bcf.vcf
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dbsnp.vcf.gz.vcf
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  1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz             dbsnp.13147541variants.22.sites.bcf      gencode.cds.22.bed.gz                 
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  gencode.cds.22.bed.gz
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  human.g1k.v37.chr22.fa.amb  human_g1k_v37.chr22.mask.100.fasta      mills.208620indels.22.sites.bcf
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  hapmap_3.3.b37.sites.chr22.vcf.gz
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  1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz.tbi        dbsnp.13147541variants.22.sites.bcf.csi  hapmap_3.3.b37.sites.chr22.vcf.gz    
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hapmap_3.3.b37.sites.chr22.vcf.gz.tbi
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  human.g1k.v37.chr22.fa.ann human_g1k_v37.chr22.mask.100.fasta.fai mills.208620indels.22.sites.bcf.csi
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  human.g1k.v37.chr22-bs.umfa
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  1000G.snps_indels.22.sites.bcf                        dbsnp_135.b37.chr22.vcf.gz               hapmap_3.3.b37.sites.chr22.vcf.gz.tbi
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  human.g1k.v37.chr22.dict
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  human.g1k.v37.chr22.fa.bwt human.g1k.v37.chr22.winsize100.gc      mills_indels_hg19.22.sites.bcf
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human.g1k.v37.chr22.fa
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  1000G.snps_indels.22.sites.bcf.csi                    dbsnp_135.b37.chr22.vcf.gz.tbi          human.g1k.v37.chr22-bs.umfa           
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  human.g1k.v37.chr22.fa.amb
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  human.g1k.v37.chr22.fa.fai humgen_g1k_v37_ploidy.chr22.map 1kg.omni.chr22.36Mb.vcf.gz                           
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human.g1k.v37.chr22.fa.ann
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  dbsnp.bcf.vcf                            human.g1k.v37.chr22.dict              human.g1k.v37.chr22.fa.pac 
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  human.g1k.v37.chr22.fa.bwt
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  indel.reference.txt 1kg.pilot_release.merged.indels.sites.hg19.chr22.vcf  dbsnp.vcf.gz.vcf                       
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  human.g1k.v37.chr22.fa.fai
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  human.g1k.v37.chr22.fa                human.g1k.v37.chr22.fa.sa  mdust.22.bed.gz
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  human.g1k.v37.chr22.fa.pac
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human.g1k.v37.chr22.fa.sa
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  human_g1k_v37.chr22.mask.100.fasta
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human_g1k_v37.chr22.mask.100.fasta.fai
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  human.g1k.v37.chr22.winsize100.gc
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humgen_g1k_v37_ploidy.chr22.map
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indel.reference.txt
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mdust.22.bed.gz
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mills.208620indels.22.sites.bcf
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mills.208620indels.22.sites.bcf.csi
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mills_indels_hg19.22.sites.bcf
 
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</div>
 
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12271"

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