Page history
13 November 2014
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Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, June 2014 without leaving a redirect
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11 July 2014
→Running GotCloud/GenomeSTRiP Metadata Pipeline
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→Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
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→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
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→Running GotCloud/GenomeSTRiP Genotyping Pipeline
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→Goals of This Session
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9 July 2014
→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
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→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
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no edit summary
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→Running GotCloud/GenomeSTRiP Metadata Pipeline
→Setup when running on your own outside of the SeqShop Workshop
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30 June 2014
→GotCloud Configuration File
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→Running GotCloud/GenomeSTRiP Genotyping Pipeline
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→Running GotCloud/GenomeSTRiP Metadata Pipeline
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27 June 2014
→Running GotCloud/GenomeSTRiP Genotyping Pipeline
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→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→Reference Files
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26 June 2014
→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→Running GotCloud/GenomeSTRiP Metadata Pipeline
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18 June 2014
→Goals of This Session
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→Goals of This Session
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→Goals of This Session
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no edit summary
-35
→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
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→Running GotCloud/GenomeSTRiP Metadata Pipeline
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→Running GotCloud/GenomeSTRiP Metadata Pipeline
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→Why use GenomeSTRiP?
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→Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
→Sequnce Alignment Files: BAM Files and Index Files
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→Sequnce Alignment Files: BAM Files and Index Files
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→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→What does a real SV look like?
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→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→How many variants are filtered out?
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→How many variants are filtered out?
→How many variants are filtered out?
→How many variants are filtered out?
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→Running GotCloud/GenomeSTRiP Discovery Pipeline
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→Overview of GotCloud/GenomeSTRiP pipeline
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→Setup your run environment
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