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Revision as of 02:05, 9 December 2014
, 02:05, 9 December 2014→Population information
8 Central/South Asian populations in the HGDP dataset, including 195 individuals after excluding 5 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration). Note that 7 out of these 8 population were collected in Pakistan and 1 was collected in China (Uygur).
8 Central/South Asian populations in the HGDP dataset, including 195 individuals after excluding 5 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration). Note that 7 out of these 8 population were collected in Pakistan and 1 was collected in China (Uygur).
[[File:HGDP Popualtions.png|thumb|center|alt=HGDP populations |600px|HGDP populations]]
[[File:HGDP Popualtions.png|thumb|center|alt=HGDP populations |300px|HGDP populations]]
=== Step 1: bam --> pileup ===
=== Step 1: bam --> pileup ===
