3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Ancestry On Your Own Genome, December 2014 (view source)
Revision as of 22:05, 11 December 2014
, 22:05, 11 December 2014no edit summary
== Setup ==
== Setup ==
<div class="mw-collapsible mw-collapsed" style="width:600px">
<div class="mw-collapsible" style="width:600px">
''If you are not already logged in, please expand this section.''
''If you are already logged in, you can skip this section.''
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
{{SeqShopLogin}}
{{SeqShopLogin}}
Resume screen:
Resume screen:
screen -r
screen -r
<div class="mw-collapsible mw-collapsed" style="width:700px">
'''Only if your snpcalling is still running, let Mary Kate know, expand, and follow these instructions'''
<div class="mw-collapsible-content">
* Detach from screen
Ctrl-a d
* Start new screen
screen
* Reset environment variables (replace SampleXX with your sample name)
export SAMPLE=SampleXX
source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
* When you detach from screen and reattach, you will have multiple screen sessions
** The ancestry one will have today's date, the snpcall one will have an earlier date.
*** Mary Kate can explain how to reattach to a specific session when we get there.
</div>
</div>
'''Instructions for everyone: Setup LASER'''
Source the LASER setup:
Source the LASER setup:
