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Revision as of 22:21, 11 December 2014
, 22:21, 11 December 2014→Run
While that's running, let's go run the Association Analysis Practical: [[SeqShop: Genetic Association Analysis Practical, December 2014]]
While that's running, let's go run the Association Analysis Practical: [[SeqShop: Genetic Association Analysis Practical, December 2014]]
=== Checking if Pileup finished ===
screen -r
'''Did everyone's finish?'''
If not, let's go to Indel: [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]]
If yes, let's continue below:
=== Step 2: pileup --> seq ===
=== Step 2: pileup --> seq ===
View the results:
View the results:
less -S $OUT/ancestry/${SAMPLE}.HGDP.SeqPC.coord
less -S $OUT/ancestry/${SAMPLE}.HGDP.SeqPC.coord
== Looking at Calling results ==
If we haven't done INDEL: [[]]
If we are moving on to SNPs: [[]]
== Visualizing Ancestry ==
== Visualizing Ancestry ==
