Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 55: Line 55:  
  Ctrl-a d
 
  Ctrl-a d
   −
Let's go look at INDEL results: [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results|Reviewing Indel Results]]
+
While that's running, let's go run the Association Analysis Practical: [[SeqShop: Genetic Association Analysis Practical, December 2014]]
    +
=== Checking if Pileup finished ===
 +
screen -r
 +
 +
'''Did everyone's finish?'''
 +
 +
 +
If not, let's go to Indel: [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]]
 +
 +
 +
If yes, let's continue below:
 
=== Step 2: pileup --> seq ===
 
=== Step 2: pileup --> seq ===
   Line 125: Line 135:     
== Visualizing Ancestry ==
 
== Visualizing Ancestry ==
Copy the R code to plot your ancestry
  −
cp -r $LASER/plot/ $OUT/ancestry/.
      
Change to that new directory:
 
Change to that new directory:
Line 144: Line 152:  
Take a look:
 
Take a look:
 
  evince Results_on_HGDP.pdf &
 
  evince Results_on_HGDP.pdf &
      
== Return to Calling your own Genome ==
 
== Return to Calling your own Genome ==
Go to [[SeqShop: Calling Your Own Genome, December 2014#Friday:_Reviewing_SNPCALL_Results|Reviewing SNPCALL Results]] and pick up where we left off.
+
Go to [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]] and pick up where we left off.

Navigation menu