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125 bytes added
, 12:43, 12 December 2014
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| Ctrl-a d | | Ctrl-a d |
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− | Let's go run the Association Analysis Practical: [[SeqShop: Genetic Association Analysis Practical, December 2014]]
| + | While that's running, let's go run the Association Analysis Practical: [[SeqShop: Genetic Association Analysis Practical, December 2014]] |
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| + | === Checking if Pileup finished === |
| + | screen -r |
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| + | '''Did everyone's finish?''' |
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| + | If not, let's go to Indel: [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]] |
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| + | If yes, let's continue below: |
| === Step 2: pileup --> seq === | | === Step 2: pileup --> seq === |
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| == Visualizing Ancestry == | | == Visualizing Ancestry == |
− | Copy the R code to plot your ancestry
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− | cp -r $LASER/plot/ $OUT/ancestry/.
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| Change to that new directory: | | Change to that new directory: |
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| Take a look: | | Take a look: |
| evince Results_on_HGDP.pdf & | | evince Results_on_HGDP.pdf & |
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| == Return to Calling your own Genome == | | == Return to Calling your own Genome == |
− | Go to [[SeqShop: Calling Your Own Genome, December 2014#Friday:_Reviewing_SNPCALL_Results|Reviewing SNPCALL Results]] and pick up where we left off. | + | Go to [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]] and pick up where we left off. |