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SeqShop: Ancestry On Your Own Genome, December 2014 (view source)

Revision as of 12:43, 12 December 2014

211 bytes removed ,  12:43, 12 December 2014
→‎Visualizing Ancestry
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View the results:
 
View the results:
 
  less -S $OUT/ancestry/${SAMPLE}.HGDP.SeqPC.coord
 
  less -S $OUT/ancestry/${SAMPLE}.HGDP.SeqPC.coord
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== Looking at Calling results ==
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If we haven't done INDEL: [[]]
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If we are moving on to SNPs: [[]]
      
== Visualizing Ancestry ==
 
== Visualizing Ancestry ==
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== Visualizing Ancestry ==
 
== Visualizing Ancestry ==
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Copy the R code to plot your ancestry
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cp -r $LASER/plot/ $OUT/ancestry/.
      
Change to that new directory:
 
Change to that new directory:
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Take a look:
 
Take a look:
 
  evince Results_on_HGDP.pdf &
 
  evince Results_on_HGDP.pdf &
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== Return to Calling your own Genome ==
 
== Return to Calling your own Genome ==
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Go to [[SeqShop: Calling Your Own Genome, December 2014#Friday:_Reviewing_SNPCALL_Results|Reviewing SNPCALL Results]] and pick up where we left off.
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Go to [[SeqShop:_Calling_Your_Own_Genome,_December_2014#Reviewing_Indel_Results]] and pick up where we left off.
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12365...12378"

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