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10 bytes added
, 13:09, 19 June 2014
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| -m $HGDP/HGDP_938.site \ | | -m $HGDP/HGDP_938.site \ |
| -o $OUT/ancestry/$SAMPLE.laser \ | | -o $OUT/ancestry/$SAMPLE.laser \ |
− | $OUT/bams/${SAMPLE}.recal.bam | + | $OUT/ancestry/Sample_37224.recal.pileup |
| | | |
| === Estimate ancestry === | | === Estimate ancestry === |
| $LASER/laser -g $HGDP/HGDP_938.geno -c $HGDP/HGDP_938.RefPC.coord -s $OUT/ancestry/$SAMPLE.laser.seq -K 20 -k 4 -x 1 -y 3 -o $OUT/ancestry/$SAMPLE.laser.1 & | | $LASER/laser -g $HGDP/HGDP_938.geno -c $HGDP/HGDP_938.RefPC.coord -s $OUT/ancestry/$SAMPLE.laser.seq -K 20 -k 4 -x 1 -y 3 -o $OUT/ancestry/$SAMPLE.laser.1 & |