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Revision as of 23:25, 18 May 2015
, 23:25, 18 May 2015→Running SNP Calling
** 2-3 of you on the machine - 3*8 = 24 jobs will be running in parallel on that machine
** 2-3 of you on the machine - 3*8 = 24 jobs will be running in parallel on that machine
${GC}/gotcloud snpcall --conf $SAMPLE/gotcloud.conf --numjobs 8 --outdir $OUT
${GC}/gotcloud snpcall --conf $SAMPLE/gotcloud.conf --numjobs 8 --outdir $OUT
* Only need the configuration & number of threads, rest is specified within the configuration.
* Only need the configuration, number of threads, and the output directory, rest is specified within the configuration.
This will run overnight. We will check if it completed at the practical in the morning.
This will run overnight. We will check if it completed at the practical in the morning.
