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If you didn't set the environmental variable, you can set it again
 
If you didn't set the environmental variable, you can set it again
   −
source /net/seqshop-server/home/mktrost/seqshop/setup.txt
   
  export SAMPLE=SampleXX (MAKE SURE TO CHANGE XX to your number or use NA12878 instead)
 
  export SAMPLE=SampleXX (MAKE SURE TO CHANGE XX to your number or use NA12878 instead)
  source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
+
  export OUT=~/$SAMPLE/output
    
In addition, set another environmental variable for locating the binaries for custom analysis
 
In addition, set another environmental variable for locating the binaries for custom analysis

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